|
Makarova, K. S., L. Aravind, N. V. Grishin, I. B. Rogozin, and E. V. Koonin . (2002) A DNA Repair System Specific for Thermophilic Archaea and Bacteria Predicted by Genomic Context Analysis. Nucleic Acids Res 30: 482–496. Makarova, K. S., L. Aravind, Y. I. Wolf, R. L. Tatusov, K. W. Minton, E. V. Koonin, and M. J. Daly. (2001a) Genome of the Extremely Radiation-Resistant Bacterium Deinococcus Radiodurans Viewed from the Perspective of Comparative Genomics. Microbiol Mol Biol Rev 65: 44–79. Makarova, K. S., N. V. Grishin, S. A. Shabalina, Y. I. Wolf, and E. V. Koonin . (2006) A Putative RNA-Interference-Based Immune System in Prokaryotes: Computational Analysis of the Predicted Enzymatic Machinery, Functional Analogies with Eukaryotic Rnai, and Hypothetical Mechanisms of Action. Biol Direct 1: 7. Makarova, K. S., M. V. Omelchenko, E. K. Gaidamakova, V. Y. Matrosova, A. Vasilenko, M. Zhai, A. Lapidus, A. Copeland, E. Kim, M. Land, K. Mavrommatis, S. Pitluck, P. M. Richardson, C. Detter, T. Brettin, E. Saunders, B. Lai, B. Ravel, K. M. Kemner, Y. I. Wolf, A. Sorokin, A. V. Gerasimova, M. S. Gelfand, J. K. Fredrickson, E. V. Koonin, and M. J. Daly . (2007a) Deinococcus Geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks. PLoS ONE 2: e955. Makarova, K. S., V. A. Ponomarev, and E. V. Koonin . (2001b) Two C or Not Two C: Recurrent Disruption of Zn-Ribbons, Gene Duplication, Lineage-Specific Gene Loss, and Horizontal Gene Transfer in Evolution of Bacterial Ribosomal Proteins. Genome Biol 2: RESEARCH 0033. Makarova, K. S., A. V. Sorokin, P. S. Novichkov, Y. I. Wolf, and E. V. Koonin . (2007b) Clusters of Orthologous Genes for 41 Archaeal Genomes and Implications for Evolutionary Genomics of Archaea. Biol Direct 2: 33. Makarova, K. S., Y. I. Wolf, and E. V. Koonin. (2003) Potential Genomic Determinants of Hyperthermophily. Trends Genet 19: 172–176. Makarova, K. S., Y. I. Wolf, and E. V. Koonin . (2009a) Comprehensive Comparative-Genomic Analysis of Type 2 Toxin-Antitoxin Systems and Related Mobile Stress Response Systems in Prokaryotes. Biol Direct 4: 19. Makarova, K. S., Y. I. Wolf, S. L. Mekhedov, B. G. Mirkin, and E. V. Koonin . (2005) Ancestral Paralogs and Pseudoparalogs and Their Role in the Emergence of the Eukaryotic Cell. Nucleic Acids Res 33: 4,626—4,638. Makarova, K. S., Y. I. Wolf, J. van der Oost, and E. V. Koonin . (2009b) Prokaryotic Homologs of Argonaute Proteins Are Predicted to Function As Key Components of a Novel System of Defense Against Mobile Genetic Elements. Biol Direct 4: 29. — 323 —
|